It's funny. I just said to myself, "My God, how could he have not found anything about dream physiology on the Web?" So, assuming to give you a couple of links to look at, I did the search myself... and found nothing! I guess there just isn't much out there on dream physiology. Or I'm really bad at doing searches.
Here's my take:
Your brain is always running. All its functions, its circuits, are active, 24/7. But when you are sleeping, the functions that handle things like sensory input and interpretation have nothing to do; yet they are still on. So, when your body is sleeping, your brain finds something for your sensory systems to do by producing dreams. So, physiologically speaking, dreams are produced by the same stuff as normal waking-life activity. This could be why there isn't much hard science defining the nature of dreams -- they're just another version of consciousness, so there really isn't anything new to describe.
Now, they may be another version of consciousness, but because of their incompleteness (i.e., memory doesn't tend to be accessible, all sensory imagery is "made up," so there is no handy reality baseline to offer structure, overall brain function is slightly altered while it cyclically rests and restores during sleep), dreams can be an extremely different conscious experience -- even though they operate on the same neural machinery and patterns as waking life consciousness.
So, even though, upon waking or during LD's, the dreaming experience is quite different than waking-life, the machinery driving them is pretty much exactly the same as the machinery driving consciousness. Note that I said "upon waking or during LD's" a second ago. This is because during NLD's, when the dream is perfectly real, your conscious experience is not different at all. It isn't until you wake up and remember what you were doing, or "wake up" lucidly during the dream and notice the oddity, that you question the "different" nature of your dreams.
You might have noticed that I did not address dreams as being the vehicle of communication between the unconscious and conscious sections of your mind, and the actual importance of all the imagery. That's because, even if dreams' entire purpose is this communication, that doesn't matter here, because the physiology is the same regardless of information being transmitted.
I'm not sure that helped much, especially if you're looking for something truly specific... plus I could have it all wrong! Hopefully someone like Zoth or Mzzkc will visit this thread, because they have a very good handle on dream physiology.
P.S.: I wrote this in a hurry, so if something was unclear, let me know and I'll try again.
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